| Name | Version | Summary | date |
| remag |
0.1.0 |
Metagenomic binning using neural networks and contrastive learning |
2025-07-26 10:06:10 |
| spatialcell |
1.0.18 |
Integrated pipeline for spatial transcriptomics cell segmentation and annotation using QuPath, Bin2cell, and TopAct |
2025-07-26 08:50:15 |
| genepattern-notebook |
25.7 |
GenePattern Notebook extension for JupyterLab |
2025-07-25 16:26:49 |
| datajoint |
0.14.5 |
DataJoint for Python is a framework for scientific workflow management based on relational principles. DataJoint is built on the foundation of the relational data model and prescribes a consistent method for organizing, populating, computing, and querying data. |
2025-07-25 13:38:40 |
| snpio |
1.6.0 |
SNPio is a Python API for population genetic file processing, filtering, and analysis. It is designed to be a user-friendly tool for the manipulation of population genetic data in a variety of formats. SNPio can be used to filter data based on missingness, MAF and MAC, singletons, biallelic, and monomorphic sites. It can also generate summary statistics for population genetic analyses. |
2025-07-25 08:41:06 |
| cogent3 |
2025.7.10a4 |
COmparative GENomics Toolkit 3: genomic sequence analysis within notebooks or on compute systems with 1000s of CPUs. |
2025-07-25 07:19:38 |
| plasmidhub |
1.0.0 |
A command-line tool for plasmid clustering, analysis, and visualization. |
2025-07-24 14:51:19 |
| phylim |
2025.7.24 |
A library for checking the limits of phylogenetic tree estimation. |
2025-07-24 00:24:08 |
| genome-tools |
2.0.0 |
A toolkit for genome analysis and manipulation. |
2025-07-23 03:32:41 |
| snowflake-cli-nextflow |
0.0.2 |
A Snowflake CLI plugin that enables running Nextflow workflows directly in Snowpark Container Services |
2025-07-23 03:29:36 |
| cooler |
0.10.4 |
Sparse binary format for genomic interaction matrices. |
2025-07-21 23:54:45 |
| pepe-cli |
1.0.5 |
Pipeline for Easy Protein Embedding - Extract embeddings and attention matrices from protein sequences |
2025-07-21 13:29:32 |
| physicell-settings |
0.2.1 |
User-friendly Python package for generating PhysiCell_settings.xml configuration files |
2025-07-20 15:48:51 |
| mdsasa-bolt |
1.1.0 |
This library allows the calculation of a solvent-accessible-surface area of a trajectory |
2025-07-20 06:52:55 |
| emdb |
0.1.7 |
A Python client for accessing the Electron Microscopy Data Bank (EMDB) |
2025-07-18 15:27:37 |
| buisciii-tools |
2.2.12 |
Tools for managing and resolution of buisciii services. |
2025-07-18 10:20:37 |
| bioforklift |
0.2.0 |
Package for handling bioinformatics data automations between data sources |
2025-07-17 16:50:54 |
| bioat |
0.15.9 |
bioat, a python package & command line toolkit for Bioinformatics and data science! |
2025-07-17 14:49:41 |
| SpaHDmap |
0.1.2 |
Interpretable high-definition dimension reduction of spatial transcriptomics data by SpaHDmap |
2025-07-17 14:20:46 |
| DockForge |
1.0 |
Preparation package for molecular docking |
2025-07-17 13:40:01 |